BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018C01SP1|AL427278
(684 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1721 1337 0.0
>3x_Contig1721
Length = 17834
Score = 1337 bits (672), Expect = 0.0
Identities = 679/684 (99%)
Strand = Plus / Minus
Query: 1 attctccattggaaatttcccatcagtgcatatgaaagagttagccgtgtattcccgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6374 attctccattggaaatttcccatcagtgcatatgaaagagttagccgtgtattcccgaat 6315
Query: 61 catgaaatgtagcacgcaatatgcaatccatttattggagcgggataatttacagatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6314 catgaaatgtagcacgcaatatgcaatccatttattggagcgggataatttacagatata 6255
Query: 121 tgawcagttagaaatcgawaaggcgttgtatcacgataatgggaagctggcacaattagc 180
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6254 tgaacagttagaaatcgataaggcgttgtatcacgataatgggaagctggcacaattagc 6195
Query: 181 gttagatgaaaatgtatcattaatcaacggattaamatccaagaacaacaataaagagcc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6194 gttagatgaaaatgtatcattaatcaacggattaaaatccaagaacaacaataaagagcc 6135
Query: 241 cgatatttctgccctttctattgcatcaggtggattagaaaaatacaatgatgataatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6134 cgatatttctgccctttctattgcatcaggtggattagaaaaatacaatgatgataatgc 6075
Query: 301 attcttctattacgaggctgggttcaactccaccacgaaattttatctttcaccattaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6074 attcttctattacgaggctgggttcaactccaccacgaaattttatctttcaccattaga 6015
Query: 361 cgttaaggtgttgaaaaacgtatttgcacactaccacgaattccctagcactatcaagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6014 cgttaaggtgttgaaaaacgtatttgcacactaccacgaattccctagcactatcaagat 5955
Query: 421 caaagttgaagacatccattacggatcaatggttacggaaacaactatatccaaattcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5954 caaagttgaagacatccattacggatcaatggttacggaaacaactatatccaaattcaa 5895
Query: 481 gtatttctctcatttaccgattggtacagagttagcattcgttgaccttgattggcgcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5894 gtatttctctcatttaccgattggtacagagttagcattcgttgaccttgattggcgcaa 5835
Query: 541 tgaggacatcattccaaaggaagtttataacavattctttgctgagttgagacaaaggca 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5834 tgaggacatcattccaaaggaagtttataacaaattctttgctgagttgagacaaaggca 5775
Query: 601 cagaaaagcgatgacaaagagaaacaaagaggataaagacaagattacctaccaagaacg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5774 cagaaaagcgatgacaaagagaaacaaagaggataaagacaagattacctaccaagaacg 5715
Query: 661 acttgagccagaacacctagaatt 684
|||||||| |||||||||||||||
Sbjct: 5714 acttgagcaagaacacctagaatt 5691
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4928
Number of Sequences: 1807
Number of extensions: 4928
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 684
length of database: 10,358,551
effective HSP length: 16
effective length of query: 668
effective length of database: 10,329,639
effective search space: 6900198852
effective search space used: 6900198852
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)